PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2305 FitnessBrowser__WCS417:GFF2305 (259 amino acids)

SeqID: GFF2305 FitnessBrowser__WCS417:GFF2305
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1730032: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2305 FitnessBrowser__WCS417:GFF2305
MAITGKVALVTGAGQGIGRAIALRLAQDGADIALVDINGARLEAVASEVVALGRQASVFV
ADVSKREQVVAAVEHAHQTLGGFDIIVNNAGVAQIDSLLEVSPEQVERTLGINVQGVLWG
IQAAGKKFKALKQKGKIINACSIAGHEGFALLGVYSATKFAVRALTQAAAKELASAGITV
NAYCPGVVGTDMWVEIDKRMAEITGADVGATYKKYVDGIALGRAETPEDVAGLVSYLAGP
DSDYMTGQSPLIDGGLVYR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory