PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2311 FitnessBrowser__WCS417:GFF2311 (452 amino acids)

SeqID: GFF2311 FitnessBrowser__WCS417:GFF2311
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595493: probable glutamine synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2311 FitnessBrowser__WCS417:GFF2311
MNAPFDQLSAWLKEHKITEVECVISDLTGIARGKIAPTNKFLHERGMRLPESVLLQTVTG
DFVDDDVYYDLLDPADIDMICRPVSHATYVVPWAIEPTAIVIHDTFDKQGNPIELSPRNV
LKKVLQLYTDQGWQPIVAPETEFYLTQRCEDPDLPLKTPIGRSGRAETGRQSFSIDAANE
FDPLFEDVYDWCEAQGLDLDTLIHEDGPAQMEINFRHGDALDLADQITVFKRTLREAALK
HNVAATFMAKPVADEPGSAMHLHQSVVDIATGKPVFVDADGKMSQLFLHHIGGLQKYIPK
LLPMFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPTSSPDAMRVENRLPGADANPY
LAIAASLLCGYLGMIEQIEPSAPVEGRVYERRNLRLPFTLEDALARMEDCATVKQYLGDK
FVRGYVAVKRAEHENFKRVISSWEREFLLLSV