PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2316 FitnessBrowser__psRCH2:GFF2316 (292 amino acids)

SeqID: GFF2316 FitnessBrowser__psRCH2:GFF2316
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [5 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 34396000: Taurine transport system permease protein tauC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2316 FitnessBrowser__psRCH2:GFF2316
MTAQISIPSAASAAQQTQPPAPAAPAEQVVRKSSFWRIRGEISRRSAWLLTGAGLSLPFV
VWWLWTALGLADPMFMPSPGAVLERIGRWWTSEGLLGDIGISVWRVMAGFGASALIALPL
GLYIGTYRPVQAFLEPLTDFIRYMPAVAFIPLVMLWVGIDEGSKVLIIFIGTFFQMVLMV
AEDVRRVPMAQIEAAQTMGANRGEIVKLVILPSAKPALLDTLRITCGWAWTYLVVAELVA
ANSGLGYAILKAQRYMHTDKIFAGILLIGLIGLLTDQAFRWLHRRAFPWMRK