PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2317 FitnessBrowser__psRCH2:GFF2317 (279 amino acids)

SeqID: GFF2317 FitnessBrowser__psRCH2:GFF2317
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118129: Sulfate/thiosulfate import ATP-binding protein cysA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2317 FitnessBrowser__psRCH2:GFF2317
MSDAKIRVRQVGKTFASERREVQALQSIDLDIQPNEFVTFVGASGCGKSTLLRIIAGLET
LSRGEILLDGRPIDGPGVDRAMVFQHYSLYPWLTVMQNIKFCRQLKVIGNTVRHDGDVES
AAGRADALLNLMGLTRFADAYPSQLSGGMQQRVAIARALLPKPATLLMDEPFGALDAQTR
EVMHDLIRHVHRLEKSTILFVTHDVEEAIYLGSRIVLMAPRPGRIDSVYEVPLPAQRHQD
MKLAPEFTELKREILARIRETSGMQTDLEQLAKLSAVAG