PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2318 FitnessBrowser__psRCH2:GFF2318 (340 amino acids)

SeqID: GFF2318 FitnessBrowser__psRCH2:GFF2318
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1170927: Homoserine O-acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2318 FitnessBrowser__psRCH2:GFF2318
MIEIKREKKFFALGEMRLENGERLRNARLCYQVVGTPNRARDNLVLIPSYYGGTHWGSLP
LLGADGPLAGGEYCVVLTNLFGAGWSTSPSNAAPGQGAADFPRVSLLDNVRAQKALLDRL
YGEDWQLALVTGWSMGGMQTLFWAMAYPERVRAILPFCCTAHCWPHNRVFLEGVKAALCA
DAAWLGGRYSVPPERGLRAFGRAYAGWAYSQAFYRQELWRELGFESLEALLDYWEQDHLE
QDANDLLCVLHTWQSADPARSFAAGSLAEALGRVRARSILMPGSSDLYFTVEDARHEAAL
IPGAELRVLESDWGHCAGGPGRGAAAMQQVFAAMAELLGR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory