PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2319 FitnessBrowser__psRCH2:GFF2319 (454 amino acids)

SeqID: GFF2319 FitnessBrowser__psRCH2:GFF2319
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 121362: Glutamine synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2319 FitnessBrowser__psRCH2:GFF2319
MTSFPLSSVEELKQQLQDKGVKYAMASYVDIHGVIKGKFVPIAHLGQMLRGSELYTGAAL
DGVPQEISDNEVAAMPDPATGTQCSWNRDLAWFASDLYLDGKPFEACSRGILKRQTEAAA
ELGYTFNLGIETEFFLFKDTPDGGFAPISERDDMAKPCYDPRLLMDNLPIVDELVQAMNE
MGWGVYSFDHEDANGQFETDFKYTDALGMADRFVFFRMMANEIARKHGAFATFMPKPSAN
RTGSGAHYNMSLADIETGKNLFEVDGEDTYGCGVTPLAYHFIAGVLKHAKAICAVIAPTV
NSYKRLIRKGAMSGSTWAPVFCCYGNNNRTNMLRIPSQGARVECRAADIGCNPYLGAAMI
LAAGLEGIRDELDPGQPHRENMYHYSEQEVVQMGIETLPRTLSEAIDAFEADPLSRQVFG
DAMYQAFVDFKRDEWNAYHTHVSDWEIQRYLKFF