PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2346 FitnessBrowser__Phaeo:GFF2346 (457 amino acids)

SeqID: GFF2346 FitnessBrowser__Phaeo:GFF2346
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600572: L-serine dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2346 FitnessBrowser__Phaeo:GFF2346
MFLSVFDMFKVGIGPSSSHTMGPMVAAAKFLDLMRASPFEFHGLRASLHGSLAFTGVGHA
TDRATILGLGGFVAHDYDDEKAVAFLAELDKTHTMHPEGLGALHFDPKADMIFDYDHALP
GHANGMILMATDAQGDVILRQVYYSIGGGFVLTEEELAAGKATDEGEPVPYPFKSAAEML
EMAKASGKSIAGMKRANEIARGCEVSLAKGTARIWQVMNDCINRGLERDGILPGGLNVRR
RAKGIHDALQAERGMNINAPHTINDWMSVYAMAVNEENAAGGQVVTAPTNGAAGTLPAVI
RYYLDHVPGAAETHVEDFLLTAAAIAGLVKYNASISGAEAGCQAEVGSAAAMSAAGLCAV
MGGTPEQVENAAEIALEHHLGMTCDPVKGLVQVPCIERNGLAAIKAVSAASLALRGDGQH
FVPLDACIETMRQTGEDMHDKYKETSLGGLAVNVPNC