PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2388 FitnessBrowser__WCS417:GFF2388 (353 amino acids)

SeqID: GFF2388 FitnessBrowser__WCS417:GFF2388
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027932: Inner membrane ABC transporter permease protein yejB]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2388 FitnessBrowser__WCS417:GFF2388
MFAYIVRRLLLIIPTLVIILLVNFVIVQAAPGGPVEQAIAHLQGIGGGAVGGSSGEGISG
GSRASRGLDPKLIADIEKQYGFDKPAPERLWLMLKSYAQLDFGNSFFRGKTVIDLILEKM
PVTLSLGLWATLITYLVSIPLGIRKAVRHGSSFDVWSSTAIVIGYAMPAFLFAMFLIVVF
AGGTSLNWFPVRGLVSENFEELSTVGKIADYFWHLVLPVTSLVIGGFATLTILTKNSFLN
EITRQYVVTARAKGLSERRVLYGHVFRNAMLLVISGIPQAFIAVFFAGSLLIEVIFSLDG
LGRMSYEAAVSRDYPVVFGSLFIFTLFGLLIKLIGDLCYTLVDPRIDFAARNA