PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2427 PGA1_c24580 putative serine hydroxymethyltransferase (435 amino acids)

SeqID: GFF2427 PGA1_c24580 putative serine hydroxymethyltransferase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2500782: Serine hydroxymethyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2427 PGA1_c24580 putative serine hydroxymethyltransferase
MPQAPQSWLPEASITRIEDITRATAGAGSDQLLDRIATLVEENRVIHEEDCFNLNPATNV
MNPKAEALLASGLGSRPSLGHPGDKYEMGLEAIEEIEVIAARLACEVFDAEFSEIRVPSG
ALANLYGFMATCRPGDTIIAPPASIGGHVTHHAAGCAGLYGLRSIEAPVLEDGYTVDLEA
LQQLAERERPKLITIGGSLNLFEHPVAGVRAIADQIGAKVMFDAAHQCGIIAGKAWADPL
AEGAHFMTMSTYKSLGGPAGGLIVSNDAEIAKALDSIAFPGMTANFDVAKSAALAVTLLD
WRDHGRAYASEMIAMAKSLAAALEAEGLPLFKTADGITMSHQFALCAAPYCGGQAASKLL
RKNGFLACGIGLPIPAVEGDMNGLRIGTPELVRWGMTSKDAAALAALIAAALRGEAVLDR
VSAWRRQFDRLHFVN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory