PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2429 FitnessBrowser__psRCH2:GFF2429 (542 amino acids)

SeqID: GFF2429 FitnessBrowser__psRCH2:GFF2429
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2429 FitnessBrowser__psRCH2:GFF2429
MRPTVEVHPSIHRNTIGDALQRIAMRSPEQIALQYRERRWSFQALDRAANRVANHLLALG
LSKADRVAAYGKNSDAYLILWLACTRAGLIHVPVNYSLTEHELAYVLDQSGARALFVDDS
LKGLVDRIPAQRQLAIRGSLHSNETTSDRSDILRIATGSACDLPPEVDIAETDVVQILYT
SGTTSDPKGAMHSHRSLMTEYSSCLLHLDIKASDRCLAALPLYHSAQMHVFTMPALLAGA
FSCLTDTPTPEEILRLLKTEQLNSFFAPPTVWIALLRHEQFVEAQLRHVQKLYYGASIMP
EPIARELGARLPQSGLYNCYGQSEIAPLATVLTPEEHRERPTSCGRPVSNVLTRIIDPST
GEECAPGVAGELVHRSPQLMVGYWEKPAETAEAFADGWFHSGDLGYRDAQGYIWIVDRIK
DIVNTGGVLVASRDVEEALYRHPHVAEVAVIGVPDQKWIEAIAAVVVLKQNATLDAQALL
HHARAHLAPFKVPKHVHFVEQLPKNSSGKLLKRVLRVQFGASARSSLGEAGDNLQQSEAS
AR