PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF244 FitnessBrowser__Marino:GFF244 (469 amino acids)

SeqID: GFF244 FitnessBrowser__Marino:GFF244
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600456: argininosuccinate lyase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF244 FitnessBrowser__Marino:GFF244
MTDQKKSDQTTSSEKPWGGRFSEPTDAFVEKFTASVGFDQRLYHHDITGSIAHATMLAEV
GVLTTDERDQIIEGLKGVKADIEAGNFQWSVSLEDVHMNIEARLTDRIGITGKKLHTGRS
RNDQVATDIRLYLRDEIDVIAEELKRLQTGLLDLAEREADTIMPGFTHLQTAQPVTFGHH
LLAWYEMLVRDAERLQDCRKRVNVMPLGAAALAGTTYPIDRAMTARLLGFDRPTENSLDS
VSDRDFAIEFCSFAALLMTHLSRFSEELVLWTSAQFDFIDLPDRFCTGSSIMPQKKNPDV
PELVRGKTGRVNGHLISLLTLMKSQPLAYNKDNQEDKEPLFDTVDTIKGCLKAYADMIPA
IRSKADNMRVAAKRGFSTATDLADYLVKKGVPFRDAHEIVGKSVAFGVAEGRDLSDMTLE
ELQQFSDHIGADVFHVLTLEGSVQARDHLGGTAPDQVRAAVGRARNQLG