PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2463 FitnessBrowser__WCS417:GFF2463 (430 amino acids)

SeqID: GFF2463 FitnessBrowser__WCS417:GFF2463
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 4033491: Inner membrane transport protein yfaV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2463 FitnessBrowser__WCS417:GFF2463
METVKLATRRWWYIMPIVFITYSLAYLDRANYGFAAASGMAEDLMITPGMSSLLGALFFL
GYFFFQVPGAIYAQKRSVKKLIFVSLILWGGLATLTGVVSNAYMLIVIRFMLGVVEAAVM
PAMLVYLCHWFTRAERSRANTFLILGNPVTMLWMSVVSGYLVQHFSWRWMFIIEGLPAVL
WAFIWWKLADERPKDAKWLSDSEKQDLETALAAEQVGIKAVKNYAEAFRSPKVIILALQF
FCWSIGVYGFVLWLPSILKQGLQMDMVEAGWLSALPYLAAVIGMLAVSWGSDKLQKRKRF
VWPPLLIASIAFYASYVLGAEHFWWSYTLLVIAGACMYAPYGPFFAIVPEILPANVAGGA
MALINSMGALGSFGGSYLVGYLNSSTGSPGTSYLLMSGALLLSVVLTIFLKPGASDRTPA
PNLELKVKTA