PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2469 PGA1_c25010 low specificity L-threonine aldolase LtaE (344 amino acids)

SeqID: GFF2469 PGA1_c25010 low specificity L-threonine aldolase LtaE
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2469 PGA1_c25010 low specificity L-threonine aldolase LtaE
MHFASDNSGPANPEILTALSAANTGYAMGYGADEEMAKVTSCIREIFEAPQAAVYLVATG
TAANVLALSTLSQPWQTLFCTRQAHINVDECNGPEFYTGGAKLTLVSDADKMTPADLRQA
LEGEENRGVHGPQRGPVSITQVTEFGTVYTLDELRALCDVSKSYGLPVHLDGARFTNALV
SLGCTPAEMTWKAGVDVVSFGGTKNGCMGVEAVIFFDPAEAQEFEYRRKRGAHLFSKHRY
LSAQMLAYLTDDLWLRNASAANAKAARLAAGLRNAGAHFSHDPQANMIFAALPRATHQRL
FDAGAVYHLWDGTLDGAAEEAVTARFVCDWSVGDDQIDAFLALL