Running PSORTb v3.0 on GFF2519 FitnessBrowser__psRCH2:GFF2519 (278 amino acids)
SeqID: GFF2519 FitnessBrowser__psRCH2:GFF2519 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Unknown [No matches against database] SCL-BLASTe- Unknown [No matches against database] Signal- Non-Cytoplasmic [Signal peptide detected] Localization Scores: OuterMembrane 2.50 Extracellular 2.50 Periplasmic 2.50 CytoplasmicMembrane 2.50 Cytoplasmic 0.00 Final Prediction: Unknown -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
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Predict transmembrane helices and signal peptides: Phobius
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>GFF2519 FitnessBrowser__psRCH2:GFF2519 MIDSSVSHKRAVFRALHQSGCFVLPNPWDAGSAAVLAAMGFKALATTSSGYAWSCARADG QMARDAVLAHMRGMVQATALPVNGDFESGFAETPEGVAESVRMAVETGIAGISIEDSTGD PREPLREISQATERMYAAREAIDATGGETLLIGRAENFFVGRPDLDDTIQRLQAYAEAGA DCLYAPGIRTREQISAVVAAVAPKPVNVLIGWDSDLTVQDLADLGVRRISVGGALARAAW AGFLSAARSIAEHGRFDGFSNAASGAELDALFGKLEKP
Lawrence Berkeley National Laboratory