PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2557 FitnessBrowser__WCS417:GFF2557 (1175 amino acids)

SeqID: GFF2557 FitnessBrowser__WCS417:GFF2557
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    Extracellular          0.01
    Periplasmic            0.01
    OuterMembrane          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2557 FitnessBrowser__WCS417:GFF2557
MTDTSLSRDQWLAKTGVLLIIDDVLPPSGPVAKGGTPTVKPKELGLFIAVNDDGLVYAFN
GHVDLGTGIRTSLAQIVAEELDLTMEQVKMVLGDTERVPNQGATIASATLQISAVPLRNA
AAEARRFLLARAAGRLGVSTASLKVDAGVIHAADGRTTTYAELVSGQHDQLRISGDAPLK
PIEDYRLVGKGAARVDIPGKATGELTYVHDMRVPGMLHGRVIRPPYAGLDCGDFVGNSLL
SVDESSIAHIPGIVAVVVIRDFVGVVALREEQAVKAASELQVHWKPWNHGLPDMTDVEQA
IRDNPRVRRTVLDQGNVDEALAGASQRMPRSYLWPYQMHGSIGPSCGVADYSPAGSRVWS
GSQNPHLLRADLAWLLACDEALIDVIRMEAAGCYGRNCADDVCADALLLSRAVGKPVRVQ
LTREQEHLWEPKGTAQLMDVDGGLNADGSIAAYDFETSYPSNGAPTLALLLTGRVEPVAA
MFEMGDRTSIPPYDIDTMRVTINDMAPIVRASWMRGVSALPNTFAHESYIDELAFAAGVD
PVEYRLRYLKDERAIDLVKSTAERANWTPRTAPMQTASDDHLLRGRGFAYARYIHSKFPG
FGAAWAAWVADVAIDKQTGDVSVTRVVIGHDSGMMINPDGVQHQIHGNVIQSTSRVLKER
VTFEESTVASKEWGGYPILTFPEVPKIDVMMMPRQDQPPMGAGESASVPSAAAIANAIYD
ATGIRFRELPITPERVLAALNAGTLGEPAKSPEKRRKWWFGALFATLGAVLATAWPFHAE
IPPIAPPSAGTWSKATLERGRLLAAVGDCAVCHTAPGGATNAGGLAMQTPFGTLYSSNIT
PDVKTGIGAWSYPAFERAMRDGIGRDGRNLYPAFPYTAFRNINEADMQALYAYLMSQVPV
SQAPTPNAMRFPFNIRPLMAGWNALNLRRGEISPQPERSEQWNRGNYLVNGLGHCAACHS
PRNLMGAEKGGKSFLAGGTVDGWEAPALNGLSKASTPWTEDQLFTYLSTGYSDAHGVAAG
PMGPVVSELSKLPKADIRAMAVYLASLKGDAAAEAPAVTAANVPNPDGRRVFEGACKACH
ADGLGPKLFGVSPSFATNTNVHSDQPDNLIKVILQGISKPATQDLGYMPGFKDSLSNSQV
ADLAAYLRAQFAPNAPQWKGLEQKVAHLRANPGTH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory