PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2585 FitnessBrowser__psRCH2:GFF2585 (688 amino acids)

SeqID: GFF2585 FitnessBrowser__psRCH2:GFF2585
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 114921: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2585 FitnessBrowser__psRCH2:GFF2585
MNEAELSPNDSEAPADRINPVVFYGSAIAIVLFAVWTMFFTDRSLAVINTVLGWISNTFG
WFYFLAVLLYLLFVVVVATSRYGKIRLGPDHSKPEFNVVTWAAMLFSAGIGIDLLFFCIA
EPITQFLEPPVGEGGSTQAARHAMELTFLHWGLSGWGVYTLVGMSLAYFSFRQGLPLSIR
SSLYPIFGKRIYGPIGHTVDTAAVLGTIFGIATSLGIGIIQLNFGLNYIFGIPEGTLTQA
VLVVLIVVFSAISAATGVERGIRRLSEFNMLLAVLLLLFVLVVGDTVFLLNALVMNVGDY
FSNFISLSLDTYAYRRPTDWLNAWTVFFWAWWIAWGPFVGLFLARISRGRTIREFVIGTL
LLPLAFMMAWMSIMGNSAIEMVMGGALEFGQQAVSNPGSSIYLFLQSLPWAGLTTIVVTI
LAIVFFVTSGDSGSLVLSNFTSILKDVNSDAPVWMRILWAAIIGVLTLALLIAGGLTALQ
GTVVIMGLPFSIVLLFMMYGLFKALHVEGVMADSYQKSLSGYLSGRATLEHTQMNWSQRL
SRAMSFPSRSQIRRYLKDVCKPAMEEIQKALGEKGVPVDIVEGEPGNEHLALHVNLGSEQ
DFTYQIWPVRGTMPSFALRTQSGNADYYRLEVHLRQGSLGYDLMGYSRRQLIEDILDHYE
HHMHFLHLQRENGGGESGMPNPGAAPTP