PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2606 PGA1_c26470 2-isopropylmalate synthase LeuA (523 amino acids)

SeqID: GFF2606 PGA1_c26470 2-isopropylmalate synthase LeuA
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596414: probable 2-isopropylmalate synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2606 PGA1_c26470 2-isopropylmalate synthase LeuA
MTTAADKDRVLIFDTTLRDGEQSPGATMTHDEKLEIAELLDDMGVDIIEAGFPIASEGDF
KAVSEIAERSKNSRICGLARANFKDIDRCAEAVKRAAQPRIHTFIGTSPLHRAIPNLTKD
EMAEKIHDTVTHARNLVDNVQWSPMDATRTEWDYLCRVIEIAIKAGATTINIPDTVGYTA
PVESADLIKRLIETVPGADDVIFATHCHNDLGMATANSLAAVAGGARQIECTINGLGERA
GNTALEEVVMALKVRNDIMPFTTGIDTQKIMHISRRVSTVSGFVVQPNKAIVGKNAFAHE
SGIHQDGMLKNKETFEIMRPEDVGIAGTSLPLGKHSGRAALRDKLSQLGFEVGDNQLKDL
FVRFKELADRKKEVFDDDIIALMRTSGDEDDHLKLVSMKVVCGTGGPAEATLEMEVEGKD
VSETAEGDGPVDAAFRAIRKIHPNSAHLQLYQVHAVTEGTDAQATVSVRLEENGVIATGE
SANTDTVVASAAAYIGALNRLIIRRDKMGEGADTREISYKDIT