PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2610 FitnessBrowser__psRCH2:GFF2610 (311 amino acids)

SeqID: GFF2610 FitnessBrowser__psRCH2:GFF2610
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597207: 3-hydroxy-3-methylglutaryl-CoA lyase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2610 FitnessBrowser__psRCH2:GFF2610
MNKRLYIQEVATRDGFQIEADFVPTEAKIALIDRLSQTGLAKIEVTSFTSPKAIPNLRDA
EDVMRGIRRVEGVEYTVLVPNVKGCERALACEVDEINLVMSASDTHGLANLRMTPEQSLV
QFREIIEVTRGSGVFINASLSTTFGCPFEGDVPERRIYELVQRLLEIGVQGITLCDTTGM
ADPAQVERICHEVLNSWPQAVFTAHFHNTRGMGLANALAALNAGIDRFDASLGGLGGCPY
APGASGNICTEDLVHMFQRMGLNTGVDLDRLLQCAADLPQLVGHDVPGAVLKAGKADRRY
PKPKWMQEAGV