PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF262 PS417_01335 hypothetical protein (966 amino acids)

SeqID: GFF262 PS417_01335 hypothetical protein
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF262 PS417_01335 hypothetical protein
MPLATLIHRASLPCPQVGTDQVAQLLAQHYGLAGTLQSLGSQQDLNYRVDSPRGRFVLKI
CRGDYDAVELHAQHAALDRLQTVRVPKVIKSLTGEALLTLNLDGQALHVRVLEYIDGQPL
THLPHLGRGVIAGFGDLCGRMSQALARFEHPGLQRTLQWDPRHAQALIKHLLATLEKLPH
RLALEQVAEQVETRIRPLADHLPWQAVHMDITDDNVVWQRDAQRHWQIQGVIDFGDLLHT
WRIADLSVTCAALLHHADGDPFAILPAIQACHAVTPLQHEELLALWPLIVARAAVLVLSS
EQQQRLDPDNRYLLKNAEHEWEIFHVATSVPFALMEAAILGCVGQAPAPLASQGFAPLLP
GLVGREFALIDLGVLSPHFEAGNWEQPGVDQRLLQEAAAVHGLAASRYGQYRLSQTQPDS
AIEPETFPLHVELHVPLGTSVEAPFAGVVRPGANGGLQVHSSGASVWLWGMKALLQPGAA
VLKGQVIGEVEGPLIVQLCRADVPAPLFCTPSRAQAWQSLCPSPAALLGLACDAEPELDP
EALLARRDASFARSQKHYYADPPRIERGWRNHLIDMQGRSYLDMLNNVAVLGHGHPRMAA
VAARQWSLLNTNSRFHYAAVTEFSERLLALAPEGMDRVFLVNSGTEANDLAIRLAWAYSG
GRDMLSVLEAYHGWSVAADAVSTSIADNPQALSSRPDWVHPVTAPNTYRGEFRGQDSAPD
YVRSVEHNLAKIAASQRQLAGFICEPVYGNAGGISLPPGYLQQVYGLVRAQGGVCIADEV
QVGYGRMGHFFWGFEEQGVVPDIITMAKGMGNGQPLGAVITRREIAEALEAEGYFFSSSG
GSPVSCRIGMAVLDVMEEEKLWENARVVGGHFKARLEELIDRHPLVGAVHGSGFYLGLEL
VRDRQTLEPATEETTLLCDRLRELGIFMQPTGDYLNILKIKPPMVTSRHSVDFFVDMLSK
VLDEQL