PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2647 FitnessBrowser__psRCH2:GFF2647 (453 amino acids)

SeqID: GFF2647 FitnessBrowser__psRCH2:GFF2647
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597714: toluate 1,2-dioxygenase alpha subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2647 FitnessBrowser__psRCH2:GFF2647
MSLGIDYLDSLLEEDKEKGIFRCKREIFTAPELFELEMKHIFEGNWIYLAHESQIPEKND
YYTTTMGRQPIFIARNKDGVLNAFINACSHRGATLCRYKRGNKATYTCPFHGWTFNNSGK
LLKVKDPKEAGYPESFDCDGSHDLKKVARFESYRGFLFGSLNPDVSSLEDFLGESRKIID
MIVDQSPEGLEVLRGSSTYVFDGNWKLQAENGADGYHVTAVHWNYAATQQQRKLKDAGDD
IRAMSAGGWGKKGGGFYSFENGHMLLWTRWDNPEDRPLFSQRDRLVEEFGEARADWMIGH
SRNLCLYPNLYLMDQFGSQLRIARPISVDKTEVTIYCIAPKGESAEARARRIRQYEDFFN
VSGMATPDDLEEFRACQEGFQGRSLQWNDMSRGAAHWIEGADESAQQIDLHPLLSGVRTE
DEGLYVVQHGYWRDQMVKAVKKEQDQLIHVEGA