PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2677 FitnessBrowser__WCS417:GFF2677 (496 amino acids)

SeqID: GFF2677 FitnessBrowser__WCS417:GFF2677
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598778: |glycerol kinase|4013685 - 4015202]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2677 FitnessBrowser__WCS417:GFF2677
MSNPVSLGIDLGTSELKAILMDLDGSVLAHAGVRLSVSRRNSGWSEQDPQDWWQACLQAL
AQLRTHEAFARVACIGLSGQMHGAVLLGADNRVLYPAILWDDSRAVAEAERLGTAFADVT
GSLPMAGLTAPKLLWLKQHEPQVFKAIDCVLSPKDYLRLRLSGERISEMSDAAGTLWLDV
ARREWFVPMLRATGLSPAQMPRLVEGGAASAVLTVDGLGLSSSVVIAGGGGDNPVAAVGI
GAIKAGDAFITLGTSAAIVAITDHAAGNPASAVHSFCHALPNRWYTMGAMLAGASCLRWV
TRLTGMPDEQTLLDQVQAQLPIKQAVPLSTPLFLPYLAGERTPHNDPLLRGGFMGLGHDC
TPAMLGYAVMEGVGFGLLDALRAVQSAGANVDACALVGGGARSEYWAQLLANILQREIYT
LHGSELSACIGAAKLGFLSIGEGDALLQAGMPVKARYRPDSAQQAVLAARYRLFQGLLGA
AKALHEQAMQPCQASR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory