PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2709 FitnessBrowser__psRCH2:GFF2709 (2843 amino acids)

SeqID: GFF2709 FitnessBrowser__psRCH2:GFF2709
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            OuterMembrane                 [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 17380408: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    OuterMembrane          0.00
    Extracellular          0.00
    Periplasmic            0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2709 FitnessBrowser__psRCH2:GFF2709
MTSVFRHILGRQQRSPVWSDLAPVREELFGTERLEHHARSLAAAQPITKRPPVVSSLHAR
LSENAAVLLAAYRSSASELEAGRSVVPAAEWLLDNYHLVEAQIREIRDDLPPGFYRQLPK
LAEGPFAGYPRVFGLAWAFVAHTDSHFDPETLRRFIVAYQQVQPLTIGELWAVAITLRIV
LIENLRRLSDQITDGSITRAAADALASRLLCAASAKRTLEDEIATRGSETMSVVFAAELA
KRLRDQDPRTTPALGWLEEELGRQGSTIDEVVQHSQQRQGASNVSVRNVITSMRLISDID
WTELFESISLVDARLRADSAFASMDFPTRNLYRSAIEQLARGSSATELEVAEAALSAARA
APTTDLAQDERVGDPGYHLIGEGRLALERSIGFSAPLGLRLSRFNVQLGIVGYVGAILLV
TALLLSVGLQALAGVGVTAGWLALLAVVAFLPVTDVATTLINRLVTWRFGAMALPALDLT
AGVPQSLRTLVAVPTLLTSEADLLEQIERIEVHHLAGAGGDLTFALLTDGLDADQETLPG
DAHLLAVAVAAIADLNRRYGPAPGGSRFLILHRRRQYNPSEGCWMGWERKRGKLHELNRL
LRGASDTSYMPLAGCAQQVPSDVRYVITLDADTRLPRDAAMRLIGKMAHPLNRPRFSEAE
QRVINGYAILQPRVTPSLPVGREGSFYQRVFSSPGGMDPYAAAVSDVYQDLFGEGSFTGK
GIYDIDAFEAALAGRVPENSMLSHDLFEGVFARAGLATDVEVVEEFPSRYEVSGKRQHRW
TRGDWQLLPWIFGARRGAQALPDIGRFKMLDNLRRSLVAPITLLALTLCWLLPLPAALIG
SALILVTMAIPAFLPICFALLPARSGICAQSHLRRLLGDLRLAASQTGLNLAFLPDQAWR
MGDAIVRTLSRLAARHHLLEWTTAAQSAISPRLKLSGFYRGMAGGIALGVGTALFALLIA
PGSWPVVLPFALLWLCAPAIALWASRSPRIAPGQQLAEADAEELRLIARRTWRFFETFVT
PDDNMLPPDNFQEDPRPVVARRTSPTNMGLYLLSAITARDFGWAGTLQTLDRLEATLGSM
SRLQRHRGHFFNWYATEDMRVLEPAYVSAVDSGNLAGHLIAIANACEEWLDAPTAPNARA
GLHDTLLLIRQAMAALPTTSGKRGRALSDLLDQIAAQLGEEQALDTLSATLHQLAEKAMR
LSLEVAPPSADDQSSDLHFWVDALGRSLSEHIRDRQLQGDTLSETEARLHEISRTTRQMA
LEMDFAFLLDPERKLLSIGYGLAENSLDPSCYDLLASEARLASLFAIAKGDVTTRHWFRL
GRTATPLGNGSALISWSGSMFEYLMPSLVMRAPAGSLLEQTNRLVVQRQQDYGNDRNVPW
GVSESAYHARDMEFTYQYSNFGVPGLGLKRGLAENLVIAPYATGLATMVDAPGALANYRR
LAQMGAVGRYGFYEALDFTPARLPDGQSVTIVRNYMAHHQGMTIVAIANTLQDGQMRARF
HREPMIQACELLLQERMPRDVAIAHPRAEEVKIRAVEASGDPQALRRLNTCAAGAAPVTH
LLSNGRYAVMLTAAGAGYSRWRDIAVTRWREDASRDDYGSFIFLRDTADGRVWPAGGQPS
DSDAVSHEVIFAEDRAEFVRHDLDLTTTLDVLVSGEDDGEVRRVSLVNSGAYAREIELTS
YSEVVLTTPSTDNAHPAFAKLFVVTEYLPDFGALLATRRLRSESERPIWAAHFAVVEGEV
VADPQYETDRARFIAQRPNVASAAVITEGLALTNTVGTVLDPIFALKYRIKVAPGKVARV
AFWTFVAGSRDEVLNLIEKHHDRSAYDRAKTLAWTQAQVQLRHLDVKPAEAADFQRLGAP
ILYADPQFRAPSAAIIEGAGAQSGLWPHSISGDLPIVLLRIDDVQDIAQVRQLLRAHEYW
RMKRLAVDLVILNEHASSYLQDLQIAIETAVRSSQSRPRFGAELAQGSVYMLRADLLSTE
ARALLRSVARVSLIARRGPIDKQLANQLLASQVPLMAPRLSARPSTAIAQPSAIDVSPHL
ECFNGLGGFDKDGREYVTLLDAGANTPAPWINVIANPQFGFQVSAQGSGYTWAENSRENQ
LTPWSNDPVTDPCGEAFYVRDEDSGALFSPTAQPIRDTGLYVARHGHGYSRFEHQADGIA
MDLLEYVPLADPIKISRLTLRNLSAVPRRLSVTRYSEWVLGTARGANAPFIITERDESCG
MLLARTPWSSAFPGRVAFADLGGRQTAWTADRRELLGRNSGPATPAALLTGAPLTGATGA
GMDPCAALQTRVELAAGESIEIIAFIGQCPSADAARALVERYRQTDLDAVLLEVTEHWRS
ALGAVQVKTPDRAMDIMLNGWLLYQTLACRIWARSAFYQASGAYGFRDQLQDGMALTFSR
PEATRSHILRAASRQFPEGDVQHWWLPHSGQGVRTRISDDRVWLAFATATYIQVAGDATI
LDEPVTFLEGPLLKPGEHDAFFQPMMAGDAAPLFEHCARGLDQCLELTGELGLPLIGGGD
WNDGMNRVGEDGKGESVWLGWLLLRTIELFAPLADQRGTVADVQRAERWRKHAQALADSL
EEKAWDGEWYRRATFDDGTWLGSKDSDECRIDSIAQSWAVLSGAADPARAKQAMASVRQH
LIREQDGLALLFTPPFDKTEKEPGYIKGYPPGLRENGGQYSHAAMWAMLAFAKLGDGDAA
CRMFSLLNPINHALTPEGSRRYKVEPYVVAADVYGVAPHKGRGGWTWYTGAAGWMHRAGV
EGILGIRREGEWLIVDPCISSQWPGFEATITLGETRYAIRLENPTQANRGIQHAQLDERS
LDCTNGWVRLALDEGQHQVVLRL