PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2757 FitnessBrowser__Marino:GFF2757 (359 amino acids)

SeqID: GFF2757 FitnessBrowser__Marino:GFF2757
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 124028636: Flavohemoprotein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2757 FitnessBrowser__Marino:GFF2757
MNKFYSLTLKEVRPETRNAVSLAFDVPEDLADKFHYQQGQHLIVRTKLDGEEVRRSYSIC
RSVNDQELRIAVKQVPGGRFSTFANEQLKPGQTLEVMPPQGHFSVDLDPEREGNYLAVAA
GSGITPILSIVKTTLETEPKSEVTLFYGNKATSSTMFRDELQDLKNEYMSRLNLVYIFTR
EEQDIDLYNGRIDHEKCDKLFDHWINAKELTAAFICGPQMMTETVRDSLLNHGMEKSRIH
FELFTPAGGVPQARKDRDPAHVDPQSISEVTVIADGRSLTFPLVRDTKSILDAGNEEGAD
LPYSCKAGVCSTCRAKVVEGEVEMDQNFALEDYEVEAGYVLSCQCYPISDKVVLDYDEM