PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2758 PGA1_c28010 KHG/KDPG aldolase (215 amino acids)

SeqID: GFF2758 PGA1_c28010 KHG/KDPG aldolase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 584746: KHG/KDPG aldolase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2758 PGA1_c28010 KHG/KDPG aldolase
MAITPQDASTRARDICQLAPIVPVLVVHDVAHARPLAEALIAGGLPALEVTLRTPAALDV
IAEMAKVKGGVVGAGTLITPEDVTRAVAAGAQFGVSPGATDTLLDAAEAAGLPMLPGAAT
ASEAMRLLDRGYDMLKFFPAEASGGAPALKAIGAPLPQISFCPTGGVSPDNADSYLSLSN
VVCAGGSWVAPAKLVEAGDWDGIRDLARAASQLAR