PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2759 HP15_2703 branched-chain amino acid ABC transporter ATP-binding protein (454 amino acids)

SeqID: GFF2759 HP15_2703 branched-chain amino acid ABC transporter ATP-binding protein
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 71164840: Cytoplasmic membrane associated cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.12
    CytoplasmicMembrane    0.88
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic (This protein may have multiple localization sites.) 9.12

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2759 HP15_2703 branched-chain amino acid ABC transporter ATP-binding protein
MSEQNTEMAPAQSRSEQAVRIIVHEHQALWRILDLLDQLLSDMNLNDQRPDERLLKTIFD
YIQHFSQRVHSTPTDIELYKRLSEKSPETAPLLEKLAKGYVIGHEKLVELRQLLAECEKG
WPEGREEFSHALARFTEALRKHIRKEEGVVIPRARKLLTEEDWQQIIEARDVENDPLFGE
RVREEFRELRHQIVSYTPEKFGGLGLKHADRVTAPHAKEEMLSIKGLVTSYGQIEVLHDV
DIHINSGEIVSLVGANGAGKSTLLMTISGLQPTDRGAITFEGKDLSKITADQRVADGIVQ
VPEGRQVFKDLSVHDNLLLGAYTRGKTPEVMDDLERMYTKFPILRQKRHNLAGELSGGQQ
QMLAMGRALMAKPRLLLLDEPSMGLAPLIIEEIFNIVKELKEEGITIFLVEQNASQALAL
ADRGYVLETGKVVIEGTGRELLSNEKVREAYLGM