PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2761 FitnessBrowser__psRCH2:GFF2761 (371 amino acids)

SeqID: GFF2761 FitnessBrowser__psRCH2:GFF2761
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16128341: alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2761 FitnessBrowser__psRCH2:GFF2761
MTIKSRAAVAFGPNQPLQIVEVDVAPPKAGEVLIRIVATGVCHTDAYTLSGEDSEGVFPC
ILGHEGGGIVEAVGEGVTSVAVGDHVIPLYTAECRECKFCKSGKTNLCSSVRATQGKGLM
PDGTTRFSYNGEPIYHYMGCSTFSEYTVLPEVSVAKIPKEAPLEKVCLLGCGVTTGIGAV
LNTAKVEEGATVAIFGLGGIGLAAIIGAKMAKASRIIAIDINPGKFAIAEELGATDFVNP
KDHDKPIQEVIVEMTDGGVDYSFECVGNVQLMRAALECCHKGWGESTIIGVAGAGQEIST
RPFQLVTGRVWRGSAFGGVKGRTELPSYVEKAQSGEIPLDTFITHNLPLDKINEAFDLMH
EGKSIRTVIHF