PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2767 PGA1_c28100 xanthine dehydrogenase XdhA (481 amino acids)

SeqID: GFF2767 PGA1_c28100 xanthine dehydrogenase XdhA
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597078: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2767 PGA1_c28100 xanthine dehydrogenase XdhA
MTITFRLNGEEVALTEVSPTATLLDWLREDRGLTGTKEGCNEGDCGACTVMVTDGHGAKP
LNACILFLPQLHGKSIRTVEGAAGPDGQLHPVQEAMITHHGSQCGFCTPGFIMSMVTAHK
NGAQDHDDQLAGNLCRCTGYAPIIRAAEAAAEAPVPDWIRAENSVTFPEILRGEAAGRGA
EPPNQNSAEPPASLRPTSADQLAAAYAARPDATLIAGATDVGLWVTKQLRDLSDVIFLDG
CEDLKEITQQPDGSLRIGAMVDMNRLRSALAARHPSYGEMLRRFASQQVRAAATIGGNIA
NGSPIGDNPPALIALGAMLHLRHGDSRRSLPLEEFFLDYGKQDRQPGEFVEAITLPALPA
EQADALRVYKLSKRFDQDISAVLGAFNLTVDDGRITAARIAFGGMAGVPKRASHVEAALV
GHSWSEAVFAAAKAEFARDFTPMSDMRASSDYRLEAAANMLTRYFEDLGQTSAPTHVLEV
K