PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF290 FitnessBrowser__psRCH2:GFF290 (338 amino acids)

SeqID: GFF290 FitnessBrowser__psRCH2:GFF290
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 12230948: Ornithine carbamoyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF290 FitnessBrowser__psRCH2:GFF290
MTPTDAKRPLQLNDQGQLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKT
VCNVFFENSTRTRTTFELAAQRLSADVITLNVSTSSTSKGETLTDTLRNLEAMAADMFVV
RHADSGAAHFIAEHVSPQVAVINGGDGRHAHPTQGMLDMLTIRRHKGSFENLSVAIVGDI
LHSRVARSNMLALKTLGCPDIRVIAPKTLLPEGIEQYGVRVFTDMNEGLRDVDVVIMLRL
QRERMQGGLLPSEGEFYKLYGLNTQRLALAKPDAIVMHPGPINRGVEIESAVADGPQSVI
LNQVTYGIAIRMAVLSMAMSGQTAQRQIDSESVSEEQQ