PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2916 FitnessBrowser__WCS417:GFF2916 (397 amino acids)

SeqID: GFF2916 FitnessBrowser__WCS417:GFF2916
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 21542067: Formyl-coenzyme A transferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2916 FitnessBrowser__WCS417:GFF2916
MTNPRPLDGITVVSLEHAIAAPFCTRQLADLGARVIKVERPGAGDFARGYDERVRGLASH
FVWTNRSKESLTLDLKQEEAGTILDTLLADADVLVQNLAPGAAARMGLSFEALHERFPRL
IVCDISGYGEGGPYEKKKAYDLLIQSEGGFLSVTGGPGEDQMAKAGCSIADISAGMYAYS
GILSALLLRGKTGKGSRIDVSMLESLVEWMGYPMYYAFDGAPQPPRAGAAHSTIYPYGPF
PTGDGGTVMLGLQNEREWAAFCDKVLLTPALATDERFSANFKRSANREVLRQIIVDSFAQ
LDAEAVIQRLESAQIASARVNDMQGVWDHPQLKARDSWRAVDSPAGPLPALLPPARNAAF
TPRMDGVPGLGQHSQGILDGLGYSTDAIDGLRARGVI