PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2931 FitnessBrowser__WCS417:GFF2931 (425 amino acids)

SeqID: GFF2931 FitnessBrowser__WCS417:GFF2931
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 77416590: Serine transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2931 FitnessBrowser__WCS417:GFF2931
MNDQANSVDERYATTPATLTSWSRQDTTWMLGLFGTAIGAGTLFLPINAGLGGFWPLVIL
ALLAFPMTFFAHRGLTRFVLSGREGSDITDVVEEHFGIKAGALITLLYFFAIFPILLIYS
VALTNTVGSFMEHQLHIMPPPRAILSFVLILGLLAVVRCGEQVIVKAMSLMVYPFIVALL
FLAVYLIPHWNGGILSTASQVPTPSALLNTLWLAIPVMVFSFNHSPIISAFAVDQKRQYG
IHADERSSQILSRAHLLMVVMVLFFVFSCVLTLSPAQLAEAKAQNLSILSYLANHFNNPT
IEFAAPLIAFVAITKSFLGHYIGASEGLKGLVLKTGRRPGAKRLDRMTAAFMLVVCWIVA
TLNPSILGMIEALGGPIIASILFLMPMYAIRKVPAMAKYRGQASNVFVTAVGLVAITAVV
YSLFA