PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2933 FitnessBrowser__Marino:GFF2933 (232 amino acids)

SeqID: GFF2933 FitnessBrowser__Marino:GFF2933
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2933 FitnessBrowser__Marino:GFF2933
MLKIEKLNQFYGESHTLWDLDLDVPQGQCTCVMGRNGVGKTTLMKCIMGEETTKNGSIEF
AGDVELTKKKVEDRSRLGIGYVPQGRQIFPLLTVEENLRTGLAVRKDGSKKIPERVYELF
PVLKEMRHRRGGDLSGGQQQQLAIGRALVIEPRLLILDEPGEGIQPNIVAQIGEVIRKLI
EEDGLTVLLVEQKLPFARKYADRFAILDRGRRVAEGEIAGLTDELIKKHLTV