PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2939 FitnessBrowser__Marino:GFF2939 (604 amino acids)

SeqID: GFF2939 FitnessBrowser__Marino:GFF2939
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2939 FitnessBrowser__Marino:GFF2939
MLGWTIRDWQQAYKEGATPESLLGELLTGLDTTDVAWISLLDQKGLDEALAGLKQKLQDA
GGEIDKLPLYGIPFAAKDNIDAVGFETTAACPAFAYTPEEDATTVARLKAAGAIVIGKTN
LDQFATGLVGTRSPYGAVPNSFKPDVVSGGSSSGSASVVARGLAPFALGTDTAGSGRVPA
GLNNLVGLKPTKGLFSIRGVVPACRSLDCVSIFALTVNDAGLVSDTMAGFDADDAFSRKP
PYALPLDGPALRRPGPIQRLAIPDHPQWFGDQQAEAAWNTAISQWRQQNVELVPLDFSPM
LELAALLYEGPWVAERHAAVESFMTSHGDDMNPVVKGIISKAGNFSATDTFKAQYRKEEL
QRQIDELLADVDALLVPTAPTAPTIEAVNADPVALNSQLGTYTNFVNLADMSALAIPAGF
RDDGLPFGVTLISGAWKDTELQRLACQWLNAHPTPLGATGNDRPEEAPGAAISTPTIKVA
VVGAHLSGMPLNTQLSERCAVLLEQTTTSANYRLFALPNTTPPKPGLKRAAPGEGREIIV
EVWEMPASAFGSFVDLIPAPLGIGNVELADGRWVNGFVCEGYGFEGAEDVTEFGGWRAYI
ASRA