PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2958 PS417_15140 3-carboxymuconate cyclase (391 amino acids)

SeqID: GFF2958 PS417_15140 3-carboxymuconate cyclase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15599399: periplasmic gluconolactonase, PpgL[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2958 PS417_15140 3-carboxymuconate cyclase
MMMRKFWPLLMAGSVGAMSVQAAPAETYELLVGSYTAGSSEGIYRLQFNSRTGQFSGKPV
LAAKAANPSWLTVSKDQKHLFVVNENGPGQNDPVGRVSSYSIDPQNYQLTLINQVQSLGN
EPTHSSVAADGRYVFVANYSVLEDPGGSLAALPVDATGKLSAPVQLSGHPSSRVNPERQA
SNHVHSVVSSPDGQYVFVQDLGADKVFAYHYDPKANPEQPLAPASPASVQLPPGSGPRHL
LFSADGKHAWLTTEMSAQVAVFDYKDGQLTQTQLVDFAAGQPVSDKAGAALHASSDGKFL
YVSNRGTANQLLVFSIDPATAHLKELQRRPVEGDHPREFSLDPSGRFLLIANQKSNEIVV
VERDPKTGLLGKTVQKMPIDAPSDLKFLVRQ