PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2964 PS417_15170 long-chain fatty acid--CoA ligase (567 amino acids)

SeqID: GFF2964 PS417_15170 long-chain fatty acid--CoA ligase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2964 PS417_15170 long-chain fatty acid--CoA ligase
MNAVSLEHTERIWLNAYLPGVPADIDAGIEDYPSLREVFLEHLEKFRERVAYVSIGTEMT
YADWQVQGVAFAAWLQGQGVRKGERVALMMPNCLQYPICLLGTILAGAVVVNVNPLYTSH
ELKHLLKDSGAETVVIFENFAHTLEKVITGSSVKRVVIAAIGDLLGTFKGAAMNFILRRV
QKQVPAFNLPGSVRFNQVLKQGRALNHFPVEMHLDALAFLQYTGGTTGDAKGVMLSHRNI
IANLLQAKAWVGDQLDQDKQETNVTLLPLYHIFSLTVNCLMFMCLGGRNILIANPRDVKR
VQMILRKERFNGIAGVNTLFNGLLENEAFCARDFSDLRMVIAGGMATHTAVAKRWKEVTG
LPIIEGYGLTECSPVVSISPIDIARMREMEFTGSIGVPLPSTWVRFVREDGELAEIGEQG
ELQVRGPQVMQGYWQRPEATAEVLDAEGWLSTGDIGVMDARGYIRLVDRKKDMILVSGFN
VYPNEIEDVVALHPAVAEVAAIGVEDGVTGEKVKIIVVRKDPNLTQEQILAHCREYLTGY
KMPKYVEFRTTELPKTTVGKVLRRALR