PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3050 FitnessBrowser__psRCH2:GFF3050 (414 amino acids)

SeqID: GFF3050 FitnessBrowser__psRCH2:GFF3050
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 12230875: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3050 FitnessBrowser__psRCH2:GFF3050
MNRITLLALGLGFCLTAQAADPITLGLNYPRTGSYKEEGLAQMRGALMAIDEINQAGGVL
GRPLQLISRNTASRPDKAIANVDKMADEGVAMLFGGVSSAVAIAASKRAKERGLLYFGTL
TYSNDTTGKDGHRYMFRECNNAWMSARVLGQYLNENMPGKTYFYITSDYTWGHTSESSLR
QATGTVDQNRHQGVKTAFPGARLSDYRAALEKASNSGAEVLVLVLFGEDMVRAMRIADEL
GLNKKMQIAIPNLTLSMVELAGPDIMRGVLGTEPWTWRVPELEGSERGKAFVRNFGDRYQ
THPSSSAASAYSIVYQWADAATRAKSIGSEQVISALENHSYSLLKGQQQWRGFDHQNVQT
VYAVRVKPREEVLKDRFKQDYFEIVHRLSGEQAAPTLAEWQEERRAGGQPTRLQ