Running PSORTb v3.0 on GFF3079 FitnessBrowser__Marino:GFF3079 (402 amino acids)
SeqID: GFF3079 FitnessBrowser__Marino:GFF3079 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Cytoplasmic [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- CytoplasmicMembrane [matched 71159382: Anaerobic glycerol-3-phosphate dehydrogenase subunit C] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: CytoplasmicMembrane 7.88 Cytoplasmic 2.11 Extracellular 0.00 Periplasmic 0.00 OuterMembrane 0.00 Final Prediction: CytoplasmicMembrane 7.88 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
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Predict transmembrane helices and signal peptides: Phobius
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>GFF3079 FitnessBrowser__Marino:GFF3079 MQTNLVQQFANTKEGQEAESILRACVHCGFCTATCPTYQELNDERDGPRGRIYLMKMFLE GAEVTEKTREHLDRCLTCRSCETTCPSGVQYGRLVDISRGLMEKEMPREPKDKWLRWALA RVIPNRQLFGVLLRLGQVFRPVLPEKLRTKVPPRKQASPWPAASHSRIVLALAGCVQPSA TPNTNAAAARVLDRLGITMVEAPEAGCCGAVNYHLSEHEKGLERMRQNIDAWWPAIEAGA EAIIMTASGCGAMVQDYGHLLKDDPVYAAKAQKVSELCTDLGAFLLKQDLEKLKVRQDPG KVAFHCPCTLQHAMKQNGVVEQVLTRAGVNLAATKDKHLCCGSAGTYSVTQPEMSQKLLG NKLKALTVDNPDRIVTANIGCQMHLETKSPVPVQHWIELLDQ
Lawrence Berkeley National Laboratory