PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF31 FitnessBrowser__Phaeo:GFF31 (324 amino acids)

SeqID: GFF31 FitnessBrowser__Phaeo:GFF31
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF31 FitnessBrowser__Phaeo:GFF31
MASLPTDFFHPVSGMEMPRFAGLPTFMRLPHVTVSDPIIDQVQLGLVGVPWDAGTTNRPG
PRHGPRQLRDLSTMIRAGNPVTGINPFSMINCADLGDVAPNPVDIIDCMERISAFYADLK
SRDIFALTVGGDHLVSLPVLRGLASGAPVGLIQFDSHTDLFDSYFGGNKYTHGTPFRRAI
EEGLVDPKRMVQIGIRGTAYNTEDVEWGQAQGVRIIRIEEFFDRGVSDVMREVREIVGDQ
PTYCTYDIDFVDPAFAPGTGTPEVGGPNSFQALQVVRELAGVQLVGADLVEVSPPFDTNG
NTAWLGASILFEMLCVSAGAISRR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory