PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3160 FitnessBrowser__psRCH2:GFF3160 (216 amino acids)

SeqID: GFF3160 FitnessBrowser__psRCH2:GFF3160
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596029: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3160 FitnessBrowser__psRCH2:GFF3160
MAATQPLLIRETFPVGPLQCNCTIIGDPVSKKAIVVDPGGDPEKIMARLDVHGLKVVSII
HTHAHLDHFLASGRMKEQTGATLHLHKADQFLWDNLEMQCRMFGVPYTPVPAPDQWLADD
EELACGCGVALHTPGHTPGSMSFWFADAKLLIAGDTLFRRGIGRTDLWGGDYASIERSIK
QRLYTLDEEATVVTGHGPDTRLGDEMRDNPFVRAGA