PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3161 FitnessBrowser__psRCH2:GFF3161 (561 amino acids)

SeqID: GFF3161 FitnessBrowser__psRCH2:GFF3161
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3161 FitnessBrowser__psRCH2:GFF3161
MLQTRVIKPAANAYQYPLLIKRLLLSGVRYERTREIVYRDQLRYDYRTLNQRVARLANVL
TAAGVKAGDTVAVMDWDSHRYLECMFAIPMIGAVVHTINVRLSPDQILYTMNHADDRFVL
VNSEFVPLYQAIAGQLTTVQKTLLLTDGDVHDAGLPDCVGEYESLLAAAAPSYDFPDFDE
DSVATTFYTTGTTGNPKGVYFTHRQLVLHTLAAAVTVGCRENPRLMGSDDVYMPITPMFH
VHAWGLPYVATMLGLKQVYPGRYDPEYLIDLWRREQVTFSHCVPTIVQMLLNAKAAQGTD
FKGWKITIGGSALTRGLYDQAKARGMNLIAAYGMSETCPLISGAHINDELLEADEDTRST
FHLKAGVPVVLVDAAIQAADGSFLPADGTSQGELVLRAPWLTQGYYNEPEKSEELWADGW
LHTGDVAVIDEMANIEIRDRIKDVIKTGGEWLSSLTLEGLISRHEAVRDVAVVGVPDERW
GERPFALVVLAEGRELNADQLQTFLEPAVAEGHINKWAIPQQVAVVSEIPKTSVGKLDKK
RIRSEIARWQEDAAVAQPSPS