PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3168 FitnessBrowser__WCS417:GFF3168 (580 amino acids)

SeqID: GFF3168 FitnessBrowser__WCS417:GFF3168
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3168 FitnessBrowser__WCS417:GFF3168
MLNKNNKLRHSISLAAVLALSGLSASAWADAYEDAAKKWIGSEFKPSTLTAEQQLEELKW
FIKAAEPFRGMKINVVSETLTTHEYESKVLAKAFSEITGIKLTHDLLQEGDVVEKLQTQM
QSDKNIYDGWVNDSDLIGTHFRYGKTESITDLMANEGKDFTSPTLDIKDFIGISFTTAPD
GKIYQLPDQQFANLYWFRADWFERPELKAKFKEKYGYDLGVPVNWSAYEDIAKFFSEDVK
EIDGKRVYGHMDYGKKDPSLGWRFTDAWFSMAGGGDKGLPNGLPVDEWGIRVEDCHPVGS
SVTRGGDTNGPAAVYATQKYVDWMKAYAPPEAAGMTFSESGPVPSQGNIAQQIFWYTAFT
ADMVKPGLPVVNADGTPKWRMAPSPVGPYWEKGMKKGYQDVGSWTFLKSTPEKQKLAAWL
YAQFVTSKTVSLKKTIVGLTPIRESDINSQAMTDMAPKLGGLVEFYRSPARTEWSPTGTN
VPDYPRLAQLWWSNIAAAASGEKTPQQALDNLAKEQDAIMTRLERSKVQPVCGPKMNPER
DAQYWFDQPGAPKPKLANEKPKGETVNYNDLLKQWEAARK