PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3224 FitnessBrowser__Phaeo:GFF3224 (282 amino acids)

SeqID: GFF3224 FitnessBrowser__Phaeo:GFF3224
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 119898: Iron(III) dicitrate transport ATP-binding protein fecE]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3224 FitnessBrowser__Phaeo:GFF3224
MAVELARENGAPAGSTESCQHLEQSPLGIRGLTVTYGEKPAVFSVDMTVEPGRMTAIIGP
NGAGKSTLLKAALGIVPPVSGRVQVFGKPLNSQRGRIAYVPQRASVDWDFPTRVIDVVMM
GLYRELGLLGRITGRHRAAAKACLDRVGMGDFATRQIGQLSGGQQQRVFLARALAQGADL
YLLDEPFAGVDAATEKAIIAVLKQLRADGKTVVVVHHDLATVGEYFDNVFLINTRKVAEG
PVAQAFTAETLQSAYGGRLATAQVDQLATAPTSRHPQTGGTL