PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3226 FitnessBrowser__Phaeo:GFF3226 (329 amino acids)

SeqID: GFF3226 FitnessBrowser__Phaeo:GFF3226
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16132198: 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3226 FitnessBrowser__Phaeo:GFF3226
MESQIAEHTAQLPQVGEPRNPGMELDLDWALGVEANTSAIERRCATLPGRRSVKKNHQAA
WLLKAITLIDLTTLSGDDTVGRVQRLCAKARQPVRADLMQALDMEPITTGAVCVYHDMIE
TAVAALDGTGIPVAAVSTGFPGGLSPFHLRLAEIEESVKAGAKEIDIVISRRHVLSGNWQ
ALYDEMKAFREACGDAHVKAILATGELGTLRNVARASLICMMAGADFIKTSTGKESVNAT
LPVSLVMIRTIRDYHERTGYRVGYKPAGGISKAKDSLVYLSLIKEELGDRWLQPDLFRFG
ASSLLGDIERQLEHHVTGAYSAGYRHALA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory