PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF325 FitnessBrowser__WCS417:GFF325 (468 amino acids)

SeqID: GFF325 FitnessBrowser__WCS417:GFF325
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 121356: Glutamine synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF325 FitnessBrowser__WCS417:GFF325
MSKSVQLIKDHDVKWIDLRFTDTKGTQHHVTMPARDALDEAFFEEGKMFDGSSIAGWKGI
EASDMILMPDDSTAVLDPFTEEPTLILVCDVIEPSTMQGYDRDPRAIAKRAEEYLKSTGI
GDTVFVGPEPEFFIFDQVKFKSDISGSMFKIYSEQGSWMSDQDVEGGNHGHRPGIKGGYF
PVPPFDHDHEIRTSMCNAMEDMGLTIEVHHHEVATAGQNEIGVKFNTLVAKADEVQTLKY
CVHNTAVAYGRTATFMPKPLYGDNGSGMHVHLSIAKEGKNTFAGEGYAGLSDTALYFIGG
IIKHGKALNGFTNPSTNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVSSPRARRIEARF
PDPAANPYLAFAALVMAGLDGIQNKIHPGDAADKNLYDLPPEEAKEIPQVCGSLKEALEE
LDKGRAFLTKGGVFSDDFIDAYIGLKSEEEIKVRTFVHPLEYELYYSC