PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3306 HP15_3248 tripartite ATP-independent periplasmic transporter, DctQ component (181 amino acids)

SeqID: GFF3306 HP15_3248 tripartite ATP-independent periplasmic transporter, DctQ component
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3306 HP15_3248 tripartite ATP-independent periplasmic transporter, DctQ component
MRWIIKLDDGLARLSIFCGWVACVAMILMAANVFYDVVARYAFNNVSIGMQEMEWHLYSV
VFLLGIPYALRTDGHVRVDVFYTKWSNKAKAWVNLVGAFIFVIPFAYLIGIYGYDFALDS
YSMGEGSGDPGGLPHRWIIKSVIPVSAVFIGIAGLNMATYAVRVMAGDKEYEGEHSGGGL
A