PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3324 PS417_17010 AMP-binding protein (544 amino acids)

SeqID: GFF3324 PS417_17010 AMP-binding protein
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3324 PS417_17010 AMP-binding protein
MDQPNQSYSRGSQDKTLLAMTIGQAFDRTVAQFPDGEALVVRHQQRRYTWRQLAETVDLH
ARAFLALGMQTGDRLGIWAPNCAEWCISQIASAKLGVILVNINPAYRSSELEYVLKQSGC
QWLVCAGSFKTSDYHAMLQALNPDLRGMISLDPSPPPGFLPWAQLAALGTGIPLEQLHSR
QTSLHFDQAVNIQYTSGTTGFPKGATLSHHNILNNGYMVGESLGLTAQDRLVIPVPLYHC
FGMVMGNLGCITHGTTMIYPNDGFDPLLTLTAVAEEHATGLYGVPTMFIAMLDHPQLGGF
DLSSLRTGIMAGATCPIEVMRRVISEMHMSEVQIAYGMTETSPVSLQTGADDDLERRVTT
VGRTQPQLENKIIDADGNTVARGEIGELCTRGYSVMLGYWNNPDATREAIDDAGWMHTGD
LASMDAHGYVCIAGRNKDMIIRGGENVYPRELEEFFFTHPAVADVQVIGIPDERYGEAIV
AWVKFHPGHVANELELQTWCKGRIAHFKTPKHFKFVEEFPMTVTGKIQKFRMREISIQEL
KNAL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory