PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3326 PS417_17020 methylcrotonoyl-CoA carboxylase (535 amino acids)

SeqID: GFF3326 PS417_17020 methylcrotonoyl-CoA carboxylase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598084: geranyl-CoA carboxylase, beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3326 PS417_17020 methylcrotonoyl-CoA carboxylase
MATLHTQLNPRSAEFAANSAAMRQQVDALHSLLAHVQQGGGAKAQERHTSRGKLLPRERI
NRLLDPGSPFLELSQLAAHQVYGEDVPAAGVIAGIGRVEGVECMIVANDATVKGGSYYPL
TVKKHLRAQTIAEQNRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSAQGIPQ
IAVVMGSCTAGGAYVPAMADEAIMVRQQATIFLAGPPLVKAATGEVVSAEDLGGADVHCK
ISGVADHYADSDEHALALARRSVANLNWRKQGGLLQRTPVAPLYSSEELYGVIPADAKQP
FDVREVIARLVDGSVFDEFKALFGTTLVCGFAHLHGYPIAILANNGILFAEAAQKGAHFI
ELACQRGIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACAKVPKFTVIIGGSFGAG
NYGMCGRAYDPRFLWMWPNARIGVMGAEQAAGVLVQVKREQAERVGVGFSAEEEAAIKQP
ILDQYETQGHPYYSSARLWDDGVIDPLQTRDVLALALSASLNAPIEPSRFGVFRM