PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3348 FitnessBrowser__Marino:GFF3348 (342 amino acids)

SeqID: GFF3348 FitnessBrowser__Marino:GFF3348
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595847: anthranilate phosphoribosyltransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3348 FitnessBrowser__Marino:GFF3348
MDMKEALNRIASNLDLSREEMKDVMRIVMNGEATDAQIGAFLMGLRLKSETIDEITGATE
VMRELATKVSVKAEPLVDIVGTGGDGANLFNVSSAASFVVAAAGGFVAKHGNRAVSSKSG
SADLLEKLGINLSMKPEEVARCVEEIGVGFMFAPAHHGAMKHAIGPRKELGCRTIFNILG
PMTNPAGVKRQLVGVFNRELCRPMTEVLHRLGAEHIMVVCSKDGLDEISLASATHVAELK
DGKVTEYDITPEDLGIKSQALVGLTVDTADDSLKLIKAAFGRGHDEMAEKARDLIALNAG
AAIYVAGLAKTPKEGVDMALDAMGSGLAAGKMSELADFSQCF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory