PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3397 FitnessBrowser__Marino:GFF3397 (566 amino acids)

SeqID: GFF3397 FitnessBrowser__Marino:GFF3397
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599167: probable acyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3397 FitnessBrowser__Marino:GFF3397
MNARQPRPETPSNDQEDRYLASTHEVFNQPPALENYNLFEQDIALQEAALREGAGKAAED
LKAFGALAGAAQTIDLGFRANANKPVFNTHDRFGHRIDEVDFHPAYHELMRIAFDNGLHS
SPWSHPGQGAHVARAAKYYMHSQVEAAHCCPVTMTFAAIPSIRKQPELAADWEARILADS
YDPRNLPDSQKSSVTIGMAMTEKQGGSDVRANSTRAYPIGAGGPGQAYELVGHKWFVSAP
MCDAFLVLAQTQSGLSCFLMPRWRPDGTKNPWQVQRLKNKMGNVANASSEAELRGALAWM
VGEEGRGVPTIIEMVAMTRFDCMIGSSAGMRQAIAQASHHCRHRSAFGARLIDQPLMQNV
LADLALESEAALAYTMRIARALDNQDKEHERLLARLATPVGKYWICKRTPNHAYEAMECI
GGSGVMEDCIMPRLFRESPVNAIWEGSGNVQCLDTLRALQKEPETLDAFFNEAAEAKGAD
RRFDQFLAQLQHDFADISDFQYRARNLVDRMALALQGSLLLRHSDAAVADAFCASRLEAS
GGMNYGNLPSGTDPAAIIKRATPVVG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory