PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3406 PS417_17430 aldehyde dehydrogenase (506 amino acids)

SeqID: GFF3406 PS417_17430 aldehyde dehydrogenase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595944: probable aldehyde dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3406 PS417_17430 aldehyde dehydrogenase
MIYAQPGTPGAIVSFKQRYGNYIGGEFVAPLSGEYFTNTSPVTGEVIAEFPRSNAADIDK
ALDAAHAAADAWGKTSPQDRSLVLLKIADRIEQHLEVLAVTESWDNGKAVRETLNADVPL
AADHFRYFAGCIRAQEGGAAEINEHTAAYHFHEPLGVVGQIIPWNFPLLMAAWKLAPALA
AGNCIVLKPAEQTPLSIMVFAELINDLLPPGVLNIVQGFGREAGEALATSKRIAKIAFTG
STPIGAHIMHAAAENLIPSTVELGGKSPNIFFEDIMQAEPQFIEKAAEGLVLAFFNQGEV
CTCPSRALVQESIYDDFMKVVMKKIVKIKRGNPLDTETMVGAQASEQQYDKILSYLKIAQ
EEGAELLTGGAAERLEGDLSSGYYIQPTLLKGHNKMRVFQEEIFGPVVGITTFKDEAEAL
AIANDSEFGLGAGLWTRDINRAYRMGRAIKAGRVWTNCYHLYPAHAAFGGYKKSGVGREN
HKMMLDHYQQTKNLLVSYDINPLGFF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory