PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3407 FitnessBrowser__WCS417:GFF3407 (591 amino acids)

SeqID: GFF3407 FitnessBrowser__WCS417:GFF3407
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11140879: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3407 FitnessBrowser__WCS417:GFF3407
MTQPARRQPFALSVLLGAILLSGQAMASVTDEEILQDPKNPGQIVTNGLGVQGQRYSPLD
TLNVDNVKELRPVWAFSFGGEKQRGQQAQPMIKDGVMYLTGSYSRVFAVDARTGKKLWQY
DARLPDDIRPCCDVINRGVALYGDLVFFGTLDAKLVALNKDTGKVVWSKKVADHKEGYSI
SAAPLVINGKLITGVAGGEFGVVGKIEAYDPKNGELLWSRPTVEGHMGYVYKDGKAVENG
ISGGEAGKTWPGDLWKTGGAAPWLGGYYDPETNLLLFGTGNPAPWNSHLRPGDNLYSSSR
LALNPDDGTIKWHFQTTPHDGWDYDGVNELVSFNYTEGGKEIKAAATADRNGFFYVLDRT
NGKFIRGFPFVDKITWATGLDKDGRPIYNDASRPGAPGSEAKGTSVFVAPAFLGAKNWMP
MAYNRDTGLFYVPSNEWGMDMWNEGIAYKKGAAFLGAGFTIKPLNEDYIGVLRAIDPKTG
KEVWRHKNFAPLWGGVLTTKGNLVFTGTPEGFLQAFNAKTGEKVWEFQTGSGVLGSPVTW
EMDGEQYVSVLSGWGGAVPLWGGEVAKRIKDFNQGGMLWTFKLPKELVAKH